Return to StrathE2E2
1
Overview
2
Requirements
3
Installing the package
3.1
Installing the supplementary data-package
EXERCISE 1
4
Let’s get started
4.1
Loading the package
4.2
Load a model
4.3
Viewing the model input data
EXERCISE 2
5
Run a model and plot basic results
EXERCISE 3
6
More detailed visualization of model outputs
6.1
Final year time series of ecological data (
e2e_plot_eco()
)
6.2
Plotting distributions of catches by gear and guild
e2e_plot_catch()
6.3
Zonal distributions of annual average biomass
e2e_plot_biomass()
6.4
Final year time series of migration fluxes (
e2e_plot_migration()
)
6.5
Plotting mean trophic level and omnivory indices
e2e_plot_trophic()
EXERCISE 4
7
Writing code to create model scenarios
EXERCISE 5
8
Fishery yield curves - a special type of scenario analysis
9
Brief tour of optimization, sensitivity analysis and MCMC functions
9.1
Parameter optimization
9.2
Sensitivity analysis
9.3
Monte Carlo analysis
EXERCISE 6
10
Installing and using other model implementations
EXERCISE 7
11
Fin
Published with bookdown
StrathE2E2 (v 4.0.0) Training Course, Mission Atlantic workshop 21st October 2022
EXERCISE 3
Run the 2003-2013 variant of the North Sea model and plot the basic results.